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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs1186313 chr6:25856881 T/C 0.000313 190 13.6 12.43 5.2 KM Plot
LIHC rs11888171 chr2:201843257 A/G 0.00047 192 13.58 13.03 11.97 KM Plot
LIHC rs11910337 chr21:44403169 T/C 5.75E-6 192 2.7 13.85 13.57 KM Plot
LIHC rs11910364 chr21:44403209 T/G 6.15E-6 191 2.7 13.85 13.65 KM Plot
LIHC rs1193341 chr1:17919207 A/G 4.9E-5 192 13.83 2.7 0 KM Plot
LIHC rs11944724 chr4:44658706 A/T 2.36E-5 191 5.7 13.17 16.07 KM Plot
LIHC rs11945842 chr4:44653041 T/A 2.73E-6 192 3.37 13.35 16.6 KM Plot
LIHC rs11972247 chr7:64448291 C/T 4.0E-12 192 1.77 5.7 13.97 KM Plot
LIHC rs11978819 chr7:64448305 G/A 4.0E-12 192 1.77 5.7 13.97 KM Plot
LIHC rs11983579 chr7:154846281 C/T 5.75E-5 189 14.03 3.87 14.95 KM Plot
LIHC rs1199669 chr1:87581701 C/T 0.000266 182 5 20.17 12.17 KM Plot
LIHC rs11998046 chr8:21411631 C/T 2.51E-9 192 0.63 20.03 12.97 KM Plot
LIHC rs12048758 chr1:224579048 A/G 1.86E-6 190 2.4 13.83 13.57 KM Plot
LIHC rs12105811 chr2:202016245 C/T 0.000304 192 13.6 12.73 3.37 KM Plot
LIHC rs12106795 chr3:125449238 A/G 5.78E-6 187 13.85 12.52 1.03 KM Plot